############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL easyRNASeq ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'easyRNASeq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq' Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq' Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq' ** help *** installing help indices converting help for package 'easyRNASeq' finding HTML links ... done BiocFileCache-methods html finding level-2 HTML links ... done GenomicRanges-methods html IRanges-methods html Rsamtools-methods html ShortRead-methods html basename-methods html easyRNASeq-AnnotParam-accessors html easyRNASeq-AnnotParam-class html easyRNASeq-AnnotParam html easyRNASeq-BamFileList html easyRNASeq-BamParam-accessors html easyRNASeq-BamParam-class html easyRNASeq-BamParam html easyRNASeq-RnaSeqParam-accessors html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-easyRNASeq/00new/easyRNASeq/help/bamParam.html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-easyRNASeq/00new/easyRNASeq/help/annotParam.html easyRNASeq-RnaSeqParam-class html easyRNASeq-RnaSeqParam html easyRNASeq-accessors html easyRNASeq-annotation-internal-methods html easyRNASeq-annotation-methods html easyRNASeq-class html easyRNASeq-correction-methods html easyRNASeq-coverage-methods html easyRNASeq-datasets html easyRNASeq-defunct-annotation-methods html easyRNASeq-defunct html easyRNASeq-easyRNASeq html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-easyRNASeq/00new/easyRNASeq/help/easyRNASeq-defunct.html easyRNASeq-global-variables html easyRNASeq-internal-AnnotParam-methods html easyRNASeq-internal-methods html easyRNASeq-island-methods html easyRNASeq-package html easyRNASeq-simpleRNASeq html easyRNASeq-summarization-internal-methods html easyRNASeq-summarization-methods html easyRNASeq-synthetic-transcripts html edgeR-methods html file.exists-methods html genomeIntervals-methods html parallel-methods html print-methods html show-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq' ** testing if installed package can be loaded from final location No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq' ** testing if installed package keeps a record of temporary installation path * DONE (easyRNASeq) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'progeny' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'spicyR' is missing or broken done