############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'cyanoFilter' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cyanoFilter' finding HTML links ... done DebrisFilter html MarginEvents html PhytoFilter html PhytopFilter html accTest html accuracy html cellmargin html clusterExtract html clusterExtractp html cyanoFilter html debrisNc html fullFlowframe-DebrisFilter-method html fullFlowframe-MarginEvents-method html fullFlowframe-PhytopFilter-method html fullFlowframe html gateFunc html getChannel html ggpairsDens html ggplotDens html ggplotDens2 html goodfcs html is.DebrisFilter html is.MarginEvents html is.PhytopFilter html is.flowFrame html is.flowSet html lnTrans html newFlowframe html nona html noneg html oneDgate html pairsPlot html pigmentGate html plot-DebrisFilter-ANY-method html plot-MarginEvents-ANY-method html plot-PhytopFilter-ANY-method html reducedFlowframe-DebrisFilter-method html reducedFlowframe-MarginEvents-method html reducedFlowframe-PhytopFilter-method html reducedFlowframe html retain html rowNumbers html summaries-DebrisFilter-method html summaries-MarginEvents-method html summaries-PhytopFilter-method html summaries html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'MLSeq' is missing or broken done