############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL crossmeta ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'crossmeta' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'crossmeta' finding HTML links ... done addContrastInput html add_adjusted html add_sources html add_vsd html bulkAnnot html bulkAnnotInput html bulkForm html bulkFormInput html bulkPage html bulkPageUI html bulkTable html bulkTableOuput html ch2_subset html clean_y html delContrastsInput html diff_expr html es_meta html exprs.MA html filter_genes html fit_ebayes html fit_lm html fix_illum_headers html finding level-2 HTML links ... done format_dl_annot html format_up_annot html get_ch2_mod html get_group_levels html get_palette html get_raw html get_sva_mods html get_top_table html get_vsd html gs.names html gslist html ilmn.nnum html iqr_replicates html is_invertible html load_agil_plat html load_diff html load_illum_plat html load_plat html load_raw html match_prev_eset html open_raw_illum html phenoData.ch2 html prefix_illum_headers html query_ref html remove_autonamed html run_limma html run_limma_setup html run_lmfit html run_select_contrasts html run_sva html setup_prev html symbol_annot html to_eset html to_ma html validate_up_annot html which_max_iqr html xls_to_txt html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crossmeta) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'iCheck' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'tripr' is missing or broken done