##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cpvSNP
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'cpvSNP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cpvSNP'
    finding HTML links ... done
    GLOSSIResult-class                      html  
    GLOSSIResultCollection-class            html  
    GeneSetResult-class                     html  
    GeneSetResultCollection-class           html  
    VEGASResult-class                       html  
    VEGASResultCollection-class             html  
    assocPvalBySetPlot                      html  
    createArrayData                         html  
    degreesOfFreedom-method                 html  
    exampleArrayData                        html  
    geneSetAnalysis                         html  
    geneSetName-methods                     html  
    geneSets                                html  
    geneToSNPList                           html  
    glossi                                  html  
    glossiMarginal                          html  
    pValue-method                           html  
    plotPvals                               html  
    show-methods                            html  
    simulate_chisq                          html  
    simulatedStats-method                   html  
    statistic-methods                       html  
    vegas                                   html  
    vegasMarginal                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cpvSNP)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'bumphunter' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  no package 'goseq' was found
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SGSeq' is missing or broken
 done