############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf cpvSNP.buildbin-libdir && mkdir cpvSNP.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=cpvSNP.buildbin-libdir cpvSNP_1.27.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'cpvSNP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cpvSNP' finding HTML links ... done GLOSSIResult-class html GLOSSIResultCollection-class html GeneSetResult-class html GeneSetResultCollection-class html VEGASResult-class html VEGASResultCollection-class html assocPvalBySetPlot html createArrayData html degreesOfFreedom-method html exampleArrayData html geneSetAnalysis html geneSetName-methods html geneSets html geneToSNPList html glossi html glossiMarginal html pValue-method html plotPvals html show-methods html simulate_chisq html simulatedStats-method html statistic-methods html vegas html vegasMarginal html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'cpvSNP' as cpvSNP_1.27.1.zip * DONE (cpvSNP)