Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:15 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for copa on riesling1


To the developers/maintainers of the copa package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/copa.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 396/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
copa 1.63.0  (landing page)
James W. MacDonald
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/copa
git_branch: master
git_last_commit: 411050b
git_last_commit_date: 2021-10-26 11:49:22 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: copa
Version: 1.63.0
Command: rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=copa.buildbin-libdir copa_1.63.0.tar.gz
StartedAt: 2022-03-17 21:02:15 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:03:20 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 65.0 seconds
RetCode: 0
Status:   OK  
PackageFile: copa_1.63.0.zip
PackageFileSize: 199.2 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=copa.buildbin-libdir copa_1.63.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'copa' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c copa.c -o copa.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/copa.buildbin-libdir/00LOCK-copa/00new/copa/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'copa'
    finding HTML links ... done
    copa                                    html  
    copa.package                            html  
    copaFilter                              html  
    copaPerm                                html  
    copaTable                               html  
    getans                                  html  
    pSum                                    html  
    perm.mat                                html  
    plotCopa                                html  
    scatterPlotCopa                         html  
    summaryCopa                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'copa' as copa_1.63.0.zip
* DONE (copa)