############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL conclus ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'conclus' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'conclus' finding HTML links ... done Dbscan-class html Tsne-class html addClustering-scRNAseq html calculateClustersSimilarity-scRNAseq html clusterCellsInternal-scRNAseq html conclusCacheClear html constructors html exportResults-scRNAseq html generateTSNECoordinates-scRNAseq html getters html loadDataOrMatrix html normaliseCountMatrix-scRNAseq html plotCellHeatmap html plotCellSimilarity-scRNAseq html plotClusteredTSNE-scRNAseq html plotClustersSimilarity html plotGeneExpression-scRNAseq html rankGenes-scRNAseq html retrieveFromGEO html retrieveGenesInfo-scRNAseq html retrieveTableClustersCells-scRNAseq html retrieveTopClustersMarkers-scRNAseq html runCONCLUS html runDBSCAN-scRNAseq html scRNAseq-class html setters html testClustering-scRNAseq html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (conclus) Making 'packages.html' ... done