############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r coMethDMR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data coMethDMR ### ############################################################################## ############################################################################## * checking for file 'coMethDMR/DESCRIPTION' ... OK * preparing 'coMethDMR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' using rmarkdown Loading required package: sesameData Loading required package: ExperimentHub Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: AnnotationHub Loading required package: BiocFileCache Loading required package: dbplyr Loading sesameData. Checking for cached SeSAMe data. snapshotDate(): 2022-03-16 Quitting from lines 105-120 (vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd) Error: processing vignette 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 1 19 unevaluated and other errors first remote error: Error in .sesameDataGet(title, use_alternative = use_alternative): Data HM450.hg19.manifest not found. --- failed re-building 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' --- re-building 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' using rmarkdown Checking for cached SeSAMe data. snapshotDate(): 2022-03-16 Checking for cached SeSAMe data. snapshotDate(): 2022-03-16 Checking for cached SeSAMe data. Checking for cached SeSAMe data. snapshotDate(): 2022-03-16 snapshotDate(): 2022-03-16 Quitting from lines 135-147 (vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd) Timing stopped at: 0.6 0 10.2 Error: processing vignette 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' failed with diagnostics: BiocParallel errors 2 remote errors, element index: 1, 6 8 unevaluated and other errors first remote error: Error in .sesameDataGet(title, use_alternative = use_alternative): Data HM450.hg19.manifest not found. --- failed re-building 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' SUMMARY: processing the following files failed: 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' Error: Vignette re-building failed. Execution halted