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###
### Running command:
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###   chmod a+r coMET -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data coMET
###
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* checking for file 'coMET/DESCRIPTION' ... OK
* preparing 'coMET':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'coMET.Rnw' using knitr
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Warning in .local(x, ...) :
  'track' parameter is deprecated now you go by the 'table' instead
                Use ucscTables(genome, track) to retrieve the list of tables for a track
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Quitting from lines 333-341 (coMET.Rnw) 
Error: processing vignette 'coMET.Rnw' failed with diagnostics:
No method for subsetting an XMLInternalDocument with numeric
--- failed re-building 'coMET.Rnw'

SUMMARY: processing the following file failed:
  'coMET.Rnw'

Error: Vignette re-building failed.
Execution halted