############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cicero ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'cicero' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cicero' finding HTML links ... done aggregate_by_cell_bin html aggregate_nearby_peaks html annotate_cds_by_site html assemble_connections html build_gene_activity_matrix html cell_data html cicero-package html cicero_data html compare_connections html df_for_coords html estimate_distance_parameter html find_overlapping_ccans html find_overlapping_coordinates html gene_annotation_sample html generate_ccans html generate_cicero_models html human.hg19.genome html make_atac_cds html make_cicero_cds html make_sparse_matrix html normalize_gene_activities html plot_accessibility_in_pseudotime html plot_connections html ranges_for_coords html run_cicero html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cicero) Making 'packages.html' ... done