Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:07 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for celaref on riesling1


To the developers/maintainers of the celaref package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/celaref.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 258/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
celaref 1.13.1  (landing page)
Sarah Williams
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/celaref
git_branch: master
git_last_commit: 1962f4d
git_last_commit_date: 2021-11-20 23:20:25 -0400 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: celaref
Version: 1.13.1
Command: rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=celaref.buildbin-libdir celaref_1.13.1.tar.gz
StartedAt: 2022-03-17 20:58:24 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 20:59:58 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 94.0 seconds
RetCode: 0
Status:   OK  
PackageFile: celaref_1.13.1.zip
PackageFileSize: 2.117 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=celaref.buildbin-libdir celaref_1.13.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'celaref' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'celaref'
    finding HTML links ... done
    contrast_each_group_to_the_rest         html  
    contrast_each_group_to_the_rest_for_norm_ma_with_limma
                                            html  
    contrast_the_group_to_the_rest          html  
    contrast_the_group_to_the_rest_with_limma_for_microarray
                                            html  
    convert_se_gene_ids                     html  
    de_table.demo_query                     html  
    de_table.demo_ref                       html  
    demo_cell_info_table                    html  
    demo_counts_matrix                      html  
    demo_gene_info_table                    html  
    demo_microarray_expr                    html  
    demo_microarray_sample_sheet            html  
    demo_query_se                           html  
    demo_ref_se                             html  
    find_within_match_differences           html  
    get_counts_index                        html  
    get_inner_or_outer_ci                   html  
    get_limma_top_table_with_ci             html  
    get_matched_stepped_mwtest_res_table    html  
    get_ranking_and_test_results            html  
    get_rankstat_table                      html  
    get_reciprocal_matches                  html  
    get_stepped_pvals_str                   html  
    get_the_up_genes_for_all_possible_groups
                                            html  
    get_the_up_genes_for_group              html  
    get_vs_random_pval                      html  
    load_dataset_10Xdata                    html  
    load_se_from_tables                     html  
    make_ranking_violin_plot                html  
    make_ref_similarity_names               html  
    make_ref_similarity_names_for_group     html  
    run_pair_test_stats                     html  
    subset_cells_by_group                   html  
    subset_se_cells_for_group_test          html  
    trim_small_groups_and_low_expression_genes
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'celaref' as celaref_1.13.1.zip
* DONE (celaref)