Aaron Lun
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_15 |
| git_last_commit: 9cac618 |
| git_last_commit_date: 2022-08-25 02:14:08 -0400 (Thu, 25 Aug 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:19:59 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the basilisk package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 120/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.8.1 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: basilisk |
| Version: 1.8.1 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings basilisk_1.8.1.tar.gz |
| StartedAt: 2022-10-18 18:38:51 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 18:54:37 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 945.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings basilisk_1.8.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
basiliskRun: no visible binding for global variable ‘.basilisk.fun’
basiliskRun: no visible binding for global variable ‘.basilisk.args’
Undefined global functions or variables:
.basilisk.args .basilisk.fun
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 156.672 17.617 183.371
setupBasiliskEnv 40.314 6.004 45.871
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
> test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=0.25.1
- python-dateutil=2.8.0
- python=3.7.7
- pytz=2019.3
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_18
libgfortran5 conda-forge/linux-64::libgfortran5-12.2.0-h337968e_18
liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3
numpy conda-forge/linux-64::numpy-1.21.6-py37h976b520_0
pandas conda-forge/linux-64::pandas-0.25.1-py37hb3f55d8_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.0-py_0
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
pytz conda-forge/noarch::pytz-2019.3-py_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
setuptools conda-forge/noarch::setuptools-65.5.0~ --> conda-forge/linux-64::setuptools-59.8.0-py37h89c1867_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=0.24.1
- python-dateutil=2.7.1
- python=3.7.7
- pytz=2018.7
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_18
libgfortran5 conda-forge/linux-64::libgfortran5-12.2.0-h337968e_18
liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3
numpy conda-forge/linux-64::numpy-1.21.6-py37h976b520_0
pandas pkgs/main/linux-64::pandas-0.24.1-py37he6710b0_0
python-dateutil conda-forge/noarch::python-dateutil-2.7.1-py_0
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
pytz conda-forge/noarch::pytz-2018.7-py_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following packages will be UPDATED:
certifi conda-forge/linux-64::certifi-2019.11~ --> pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
python conda-forge::python-2.7.15-h5a48372_1~ --> pkgs/main::python-2.7.18-h02575d3_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python[version='2.7.*,2.7.*']
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
certifi pkgs/main/noarch::certifi-2020.6.20-p~ --> conda-forge/linux-64::certifi-2016.9.26-py27_0
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
python pkgs/main::python-2.7.18-h02575d3_0 --> conda-forge::python-2.7.15-h5a48372_1011_cpython
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.7.1
- python=3.7.7
- pytz=2018.7
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.7.1-py_0
pytz conda-forge/noarch::pytz-2018.7-py_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting pandas==0.24.1
Using cached pandas-0.24.1-cp37-cp37m-manylinux1_x86_64.whl (10.1 MB)
Requirement already satisfied: python-dateutil>=2.5.0 in ./install-test-client/thingo/lib/python3.7/site-packages (from pandas==0.24.1) (2.7.1)
Collecting numpy>=1.12.0
Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
Requirement already satisfied: pytz>=2011k in ./install-test-client/thingo/lib/python3.7/site-packages (from pandas==0.24.1) (2018.7)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.7/site-packages (from python-dateutil>=2.5.0->pandas==0.24.1) (1.16.0)
Installing collected packages: numpy, pandas
Successfully installed numpy-1.21.6 pandas-0.24.1
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Processing /home/biocbuild/bbs-3.15-bioc/R/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test-dummy
Building wheel for test-dummy (setup.py): started
Building wheel for test-dummy (setup.py): finished with status 'done'
Created wheel for test-dummy: filename=test_dummy-0.1-py3-none-any.whl size=1280 sha256=a77acc9a79be9e4fc3c46a9204a4b12649a6e9d99a3959bfbd9444897c8e7218
Stored in directory: /tmp/pip-ephem-wheel-cache-fow843rj/wheels/23/19/b4/7afa587abf151ad5c558595410c1d2df20486f41bc6b158c26
Successfully built test-dummy
Installing collected packages: test-dummy
Successfully installed test-dummy-0.1
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1
Current channels:
- https://conda.anaconda.org/conda-forge/linux-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/linux-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/linux-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.3-Linux-x86_64.sh'
Content type 'application/x-sh' length 88867207 bytes (84.8 MB)
==================================================
downloaded 84.8 MB
PREFIX=/tmp/RtmprvRfqD/file2649f33ede0543/1.8.1/0
Unpacking payload ...
0%| | 0/35 [00:00<?, ?it/s]
Extracting : cffi-1.14.0-py37he30daa8_1.conda: 0%| | 0/35 [00:00<?, ?it/s]
Extracting : cffi-1.14.0-py37he30daa8_1.conda: 3%|▎ | 1/35 [00:00<00:07, 4.65it/s]
Extracting : certifi-2020.4.5.1-py37_0.conda: 3%|▎ | 1/35 [00:00<00:07, 4.65it/s]
Extracting : tqdm-4.46.0-py_0.conda: 6%|▌ | 2/35 [00:00<00:07, 4.65it/s]
Extracting : pyopenssl-19.1.0-py37_0.conda: 9%|▊ | 3/35 [00:00<00:06, 4.65it/s]
Extracting : pyopenssl-19.1.0-py37_0.conda: 11%|█▏ | 4/35 [00:00<00:04, 6.23it/s]
Extracting : pysocks-1.7.1-py37_0.conda: 11%|█▏ | 4/35 [00:00<00:04, 6.23it/s]
Extracting : requests-2.23.0-py37_0.conda: 14%|█▍ | 5/35 [00:00<00:04, 6.23it/s]
Extracting : pycparser-2.20-py_0.conda: 17%|█▋ | 6/35 [00:00<00:04, 6.23it/s]
Extracting : pip-20.0.2-py37_3.conda: 20%|██ | 7/35 [00:00<00:04, 6.23it/s]
Extracting : python-3.7.7-hcff3b4d_5.conda: 23%|██▎ | 8/35 [00:00<00:04, 6.23it/s]
Extracting : python-3.7.7-hcff3b4d_5.conda: 26%|██▌ | 9/35 [00:00<00:03, 6.79it/s]
Extracting : ca-certificates-2020.1.1-0.conda: 26%|██▌ | 9/35 [00:00<00:03, 6.79it/s]
Extracting : wheel-0.34.2-py37_0.conda: 29%|██▊ | 10/35 [00:00<00:03, 6.79it/s]
Extracting : ncurses-6.2-he6710b0_1.conda: 31%|███▏ | 11/35 [00:00<00:03, 6.79it/s]
Extracting : yaml-0.1.7-had09818_2.conda: 34%|███▍ | 12/35 [00:00<00:03, 6.79it/s]
Extracting : tk-8.6.8-hbc83047_0.conda: 37%|███▋ | 13/35 [00:00<00:03, 6.79it/s]
Extracting : idna-2.9-py_1.conda: 40%|████ | 14/35 [00:00<00:03, 6.79it/s]
Extracting : six-1.14.0-py37_0.conda: 43%|████▎ | 15/35 [00:00<00:02, 6.79it/s]
Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda: 46%|████▌ | 16/35 [00:00<00:02, 6.79it/s]
Extracting : conda-package-handling-1.6.1-py37h7b6447c_0.conda: 49%|████▊ | 17/35 [00:00<00:02, 6.79it/s]
Extracting : libstdcxx-ng-9.1.0-hdf63c60_0.conda: 51%|█████▏ | 18/35 [00:00<00:02, 6.79it/s]
Extracting : readline-8.0-h7b6447c_0.conda: 54%|█████▍ | 19/35 [00:00<00:02, 6.79it/s]
Extracting : setuptools-46.4.0-py37_0.conda: 57%|█████▋ | 20/35 [00:00<00:02, 6.79it/s]
Extracting : libffi-3.3-he6710b0_1.conda: 60%|██████ | 21/35 [00:00<00:02, 6.79it/s]
Extracting : libedit-3.1.20181209-hc058e9b_0.conda: 63%|██████▎ | 22/35 [00:00<00:01, 6.79it/s]
Extracting : cryptography-2.9.2-py37h1ba5d50_0.conda: 66%|██████▌ | 23/35 [00:00<00:01, 6.79it/s]
Extracting : chardet-3.0.4-py37_1003.conda: 69%|██████▊ | 24/35 [00:00<00:01, 6.79it/s]
Extracting : urllib3-1.25.8-py37_0.conda: 71%|███████▏ | 25/35 [00:00<00:01, 6.79it/s]
Extracting : xz-5.2.5-h7b6447c_0.conda: 74%|███████▍ | 26/35 [00:00<00:01, 6.79it/s]
Extracting : _libgcc_mutex-0.1-main.conda: 77%|███████▋ | 27/35 [00:00<00:01, 6.79it/s]
Extracting : ruamel_yaml-0.15.87-py37h7b6447c_0.conda: 80%|████████ | 28/35 [00:00<00:01, 6.79it/s]
Extracting : openssl-1.1.1g-h7b6447c_0.conda: 83%|████████▎ | 29/35 [00:00<00:00, 6.79it/s]
Extracting : pycosat-0.6.3-py37h7b6447c_0.conda: 86%|████████▌ | 30/35 [00:00<00:00, 6.79it/s]
Extracting : zlib-1.2.11-h7b6447c_3.conda: 89%|████████▊ | 31/35 [00:00<00:00, 6.79it/s]
Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda: 91%|█████████▏| 32/35 [00:00<00:00, 6.79it/s]
Extracting : sqlite-3.31.1-h62c20be_1.conda: 94%|█████████▍| 33/35 [00:00<00:00, 6.79it/s]
Extracting : conda-4.8.3-py37_0.tar.bz2: 97%|█████████▋| 34/35 [00:00<00:00, 6.79it/s]
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/RtmprvRfqD/file2649f33ede0543/1.8.1/0
added / updated specs:
- _libgcc_mutex==0.1=main
- ca-certificates==2020.1.1=0
- certifi==2020.4.5.1=py37_0
- cffi==1.14.0=py37he30daa8_1
- chardet==3.0.4=py37_1003
- conda-package-handling==1.6.1=py37h7b6447c_0
- conda==4.8.3=py37_0
- cryptography==2.9.2=py37h1ba5d50_0
- idna==2.9=py_1
- ld_impl_linux-64==2.33.1=h53a641e_7
- libedit==3.1.20181209=hc058e9b_0
- libffi==3.3=he6710b0_1
- libgcc-ng==9.1.0=hdf63c60_0
- libstdcxx-ng==9.1.0=hdf63c60_0
- ncurses==6.2=he6710b0_1
- openssl==1.1.1g=h7b6447c_0
- pip==20.0.2=py37_3
- pycosat==0.6.3=py37h7b6447c_0
- pycparser==2.20=py_0
- pyopenssl==19.1.0=py37_0
- pysocks==1.7.1=py37_0
- python==3.7.7=hcff3b4d_5
- readline==8.0=h7b6447c_0
- requests==2.23.0=py37_0
- ruamel_yaml==0.15.87=py37h7b6447c_0
- setuptools==46.4.0=py37_0
- six==1.14.0=py37_0
- sqlite==3.31.1=h62c20be_1
- tk==8.6.8=hbc83047_0
- tqdm==4.46.0=py_0
- urllib3==1.25.8=py37_0
- wheel==0.34.2=py37_0
- xz==5.2.5=h7b6447c_0
- yaml==0.1.7=had09818_2
- zlib==1.2.11=h7b6447c_3
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
ca-certificates pkgs/main/linux-64::ca-certificates-2020.1.1-0
certifi pkgs/main/linux-64::certifi-2020.4.5.1-py37_0
cffi pkgs/main/linux-64::cffi-1.14.0-py37he30daa8_1
chardet pkgs/main/linux-64::chardet-3.0.4-py37_1003
conda pkgs/main/linux-64::conda-4.8.3-py37_0
conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.6.1-py37h7b6447c_0
cryptography pkgs/main/linux-64::cryptography-2.9.2-py37h1ba5d50_0
idna pkgs/main/noarch::idna-2.9-py_1
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
libedit pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0
libffi pkgs/main/linux-64::libffi-3.3-he6710b0_1
libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
ncurses pkgs/main/linux-64::ncurses-6.2-he6710b0_1
openssl pkgs/main/linux-64::openssl-1.1.1g-h7b6447c_0
pip pkgs/main/linux-64::pip-20.0.2-py37_3
pycosat pkgs/main/linux-64::pycosat-0.6.3-py37h7b6447c_0
pycparser pkgs/main/noarch::pycparser-2.20-py_0
pyopenssl pkgs/main/linux-64::pyopenssl-19.1.0-py37_0
pysocks pkgs/main/linux-64::pysocks-1.7.1-py37_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline pkgs/main/linux-64::readline-8.0-h7b6447c_0
requests pkgs/main/linux-64::requests-2.23.0-py37_0
ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.87-py37h7b6447c_0
setuptools pkgs/main/linux-64::setuptools-46.4.0-py37_0
six pkgs/main/linux-64::six-1.14.0-py37_0
sqlite pkgs/main/linux-64::sqlite-3.31.1-h62c20be_1
tk pkgs/main/linux-64::tk-8.6.8-hbc83047_0
tqdm pkgs/main/noarch::tqdm-4.46.0-py_0
urllib3 pkgs/main/linux-64::urllib3-1.25.8-py37_0
wheel pkgs/main/linux-64::wheel-0.34.2-py37_0
xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
yaml pkgs/main/linux-64::yaml-0.1.7-had09818_2
zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/RtmprvRfqD/file2649f33ede0543/1.8.1/basilisk.utils/1.8.0/test
added / updated specs:
- python=3.7.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
_libgcc_mutex-0.1 | conda_forge 3 KB conda-forge
_openmp_mutex-4.5 | 2_gnu 23 KB conda-forge
ca-certificates-2022.9.24 | ha878542_0 150 KB conda-forge
ld_impl_linux-64-2.39 | hc81fddc_0 759 KB conda-forge
libffi-3.3 | h58526e2_2 51 KB conda-forge
libgcc-ng-12.2.0 | h65d4601_18 936 KB conda-forge
libgomp-12.2.0 | h65d4601_18 455 KB conda-forge
libsqlite-3.39.4 | h753d276_0 803 KB conda-forge
libstdcxx-ng-12.2.0 | h46fd767_18 4.3 MB conda-forge
libzlib-1.2.13 | h166bdaf_4 64 KB conda-forge
ncurses-6.3 | h27087fc_1 1002 KB conda-forge
openssl-1.1.1q | h166bdaf_0 2.1 MB conda-forge
pip-22.3 | pyhd8ed1ab_0 1.5 MB conda-forge
readline-8.1.2 | h0f457ee_0 291 KB conda-forge
setuptools-65.5.0 | pyhd8ed1ab_0 768 KB conda-forge
sqlite-3.39.4 | h4ff8645_0 789 KB conda-forge
tk-8.6.12 | h27826a3_0 3.3 MB conda-forge
wheel-0.37.1 | pyhd8ed1ab_0 31 KB conda-forge
xz-5.2.6 | h166bdaf_0 409 KB conda-forge
zlib-1.2.13 | h166bdaf_4 92 KB conda-forge
------------------------------------------------------------
Total: 17.7 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/RtmprvRfqD/file2649f33ede0543/1.8.1/basilisk.utils/1.8.0/test
added / updated specs:
- python=3.7.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2022.07.19 | h06a4308_0 124 KB
openssl-1.1.1q | h7f8727e_0 2.5 MB
------------------------------------------------------------
Total: 2.6 MB
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Downloading and Extracting Packages
openssl-1.1.1q | 2.5 MB | | 0%
openssl-1.1.1q | 2.5 MB | ###8 | 39%
openssl-1.1.1q | 2.5 MB | ########## | 100%
ca-certificates-2022 | 124 KB | | 0%
ca-certificates-2022 | 124 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/RtmprvRfqD/file2649f33ede0543/1.8.1/basilisk.utils/1.8.0/test
added / updated specs:
- pandas=0.25.1
- python=3.7.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |16_linux64_openblas 13 KB conda-forge
libcblas-3.9.0 |16_linux64_openblas 13 KB conda-forge
libgfortran-ng-12.2.0 | h69a702a_18 22 KB conda-forge
libgfortran5-12.2.0 | h337968e_18 1.8 MB conda-forge
liblapack-3.9.0 |16_linux64_openblas 13 KB conda-forge
libopenblas-0.3.21 |pthreads_h78a6416_3 10.1 MB conda-forge
numpy-1.21.6 | py37h976b520_0 6.1 MB conda-forge
pandas-0.25.1 | py37hb3f55d8_0 11.4 MB conda-forge
python-dateutil-2.8.2 | pyhd8ed1ab_0 240 KB conda-forge
python_abi-3.7 | 2_cp37m 4 KB conda-forge
pytz-2022.4 | pyhd8ed1ab_0 232 KB conda-forge
setuptools-59.8.0 | py37h89c1867_1 1.0 MB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 30.9 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_18
libgfortran5 conda-forge/linux-64::libgfortran5-12.2.0-h337968e_18
liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3
numpy conda-forge/linux-64::numpy-1.21.6-py37h976b520_0
pandas conda-forge/linux-64::pandas-0.25.1-py37hb3f55d8_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
pytz conda-forge/noarch::pytz-2022.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
setuptools conda-forge/noarch::setuptools-65.5.0~ --> conda-forge/linux-64::setuptools-59.8.0-py37h89c1867_1
Downloading and Extracting Packages
six-1.16.0 | 14 KB | | 0%
six-1.16.0 | 14 KB | ########## | 100%
libblas-3.9.0 | 13 KB | | 0%
libblas-3.9.0 | 13 KB | ########## | 100%
libcblas-3.9.0 | 13 KB | | 0%
libcblas-3.9.0 | 13 KB | ########## | 100%
libgfortran5-12.2.0 | 1.8 MB | | 0%
libgfortran5-12.2.0 | 1.8 MB | ########## | 100%
pytz-2022.4 | 232 KB | | 0%
pytz-2022.4 | 232 KB | ########## | 100%
libopenblas-0.3.21 | 10.1 MB | | 0%
libopenblas-0.3.21 | 10.1 MB | ###4 | 34%
libopenblas-0.3.21 | 10.1 MB | ########3 | 83%
libopenblas-0.3.21 | 10.1 MB | ########## | 100%
libgfortran-ng-12.2. | 22 KB | | 0%
libgfortran-ng-12.2. | 22 KB | ########## | 100%
python-dateutil-2.8. | 240 KB | | 0%
python-dateutil-2.8. | 240 KB | ########## | 100%
setuptools-59.8.0 | 1.0 MB | | 0%
setuptools-59.8.0 | 1.0 MB | ########## | 100%
liblapack-3.9.0 | 13 KB | | 0%
liblapack-3.9.0 | 13 KB | ########## | 100%
python_abi-3.7 | 4 KB | | 0%
python_abi-3.7 | 4 KB | ########## | 100%
numpy-1.21.6 | 6.1 MB | | 0%
numpy-1.21.6 | 6.1 MB | #####6 | 57%
numpy-1.21.6 | 6.1 MB | ########## | 100%
pandas-0.25.1 | 11.4 MB | | 0%
pandas-0.25.1 | 11.4 MB | 8 | 8%
pandas-0.25.1 | 11.4 MB | ##6 | 26%
pandas-0.25.1 | 11.4 MB | ####2 | 42%
pandas-0.25.1 | 11.4 MB | ######2 | 63%
pandas-0.25.1 | 11.4 MB | ######## | 80%
pandas-0.25.1 | 11.4 MB | #########7 | 98%
pandas-0.25.1 | 11.4 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
* installing *source* package ‘son.of.basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (son.of.basilisk)
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:30: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
method='lar', copy_X=True, eps=np.finfo(np.float).eps,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:167: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
method='lar', copy_X=True, eps=np.finfo(np.float).eps,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:284: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
eps=np.finfo(np.float).eps, copy_Gram=True, verbose=0,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:862: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
eps=np.finfo(np.float).eps, copy_X=True, fit_path=True,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:1101: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
eps=np.finfo(np.float).eps, copy_X=True, fit_path=True,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:1127: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
eps=np.finfo(np.float).eps, positive=False):
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:1362: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
max_n_alphas=1000, n_jobs=None, eps=np.finfo(np.float).eps,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:1602: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
max_n_alphas=1000, n_jobs=None, eps=np.finfo(np.float).eps,
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/linear_model/least_angle.py:1738: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
eps=np.finfo(np.float).eps, copy_X=True, positive=False):
/home/biocbuild/.cache/R/basilisk/1.8.1/son.of.basilisk/0.99.0/env2/lib/python3.7/site-packages/sklearn/decomposition/online_lda.py:29: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
EPS = np.finfo(np.float).eps
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=0.25.1
- python-dateutil=2.8.0
- python=3.7.7
- pytz=2019.3
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_18
libgfortran5 conda-forge/linux-64::libgfortran5-12.2.0-h337968e_18
liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3
numpy conda-forge/linux-64::numpy-1.21.6-py37h976b520_0
pandas conda-forge/linux-64::pandas-0.25.1-py37hb3f55d8_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.0-py_0
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
pytz conda-forge/noarch::pytz-2019.3-py_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
setuptools conda-forge/noarch::setuptools-65.5.0~ --> conda-forge/linux-64::setuptools-59.8.0-py37h89c1867_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.7.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.39-hc81fddc_0
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-ng conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_18
libgomp conda-forge/linux-64::libgomp-12.2.0-h65d4601_18
libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_18
libzlib conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0
pip conda-forge/noarch::pip-22.3-pyhd8ed1ab_0
python pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0
setuptools conda-forge/noarch::setuptools-65.5.0-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.39.4-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
zlib conda-forge/linux-64::zlib-1.2.13-h166bdaf_4
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.7.7
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2022.9.2~ --> pkgs/main::ca-certificates-2022.07.19-h06a4308_0
openssl conda-forge::openssl-1.1.1q-h166bdaf_0 --> pkgs/main::openssl-1.1.1q-h7f8727e_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.15-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=0.24.1
- python-dateutil=2.7.1
- python=3.7.7
- pytz=2018.7
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_18
libgfortran5 conda-forge/linux-64::libgfortran5-12.2.0-h337968e_18
liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3
numpy conda-forge/linux-64::numpy-1.21.6-py37h976b520_0
pandas pkgs/main/linux-64::pandas-0.24.1-py37he6710b0_0
python-dateutil conda-forge/noarch::python-dateutil-2.7.1-py_0
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
pytz conda-forge/noarch::pytz-2018.7-py_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
ca-certificates pkgs/main::ca-certificates-2022.07.19~ --> conda-forge::ca-certificates-2022.9.24-ha878542_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl pkgs/main::openssl-1.1.1q-h7f8727e_0 --> conda-forge::openssl-1.1.1q-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.3
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 47 ]
>
> proc.time()
user system elapsed
563.959 74.150 671.366
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.000 | 0.002 | 0.003 | |
| PyPiLink | 0.001 | 0.000 | 0.000 | |
| basiliskOptions | 0.001 | 0.000 | 0.000 | |
| basiliskStart | 156.672 | 17.617 | 183.371 | |
| configureBasiliskEnv | 0.003 | 0.000 | 0.003 | |
| findPersistentEnv | 0.046 | 0.000 | 3.036 | |
| listPackages | 0.751 | 0.171 | 1.073 | |
| setupBasiliskEnv | 40.314 | 6.004 | 45.871 | |
| useBasiliskEnv | 0.768 | 0.158 | 0.888 | |