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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL animalcules
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'animalcules' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'SummarizedExperiment::colnames' by 'biomformat::colnames' when loading 'animalcules'
Warning: replacing previous import 'SummarizedExperiment::rownames' by 'biomformat::rownames' when loading 'animalcules'
** help
*** installing help indices
  converting help for package 'animalcules'
    finding HTML links ... done
    alpha_div_boxplot                       html  
    alpha_div_test                          html  
    animalcules-package                     html  
    counts_to_logcpm                        html  
    counts_to_relabu                        html  
    df_char_to_factor                       html  
    differential_abundance                  html  
    dimred_pca                              html  
    dimred_pcoa                             html  
    dimred_tsne                             html  
    dimred_umap                             html  
    diversities                             html  
    diversities_help                        html  
    diversity_beta_boxplot                  html  
    diversity_beta_heatmap                  html  
    diversity_beta_test                     html  
    do_alpha_div_test                       html  
    filter_categorize                       html  
    filter_summary_bar_density              html  
    filter_summary_pie_box                  html  
    find_biomarker                          html  
    find_taxon_mat                          html  
    find_taxonomy                           html  
    find_taxonomy_300                       html  
    gini_simpson                            html  
    grep_tid                                html  
    inverse_simpson                         html  
    is_categorical                          html  
    is_integer0                             html  
    is_integer1                             html  
    mae_pick_organisms                      html  
    mae_pick_samples                        html  
    pct2str                                 html  
    percent                                 html  
    read_pathoscope_data                    html  
    relabu_barplot                          html  
    relabu_boxplot                          html  
    relabu_heatmap                          html  
    run_animalcules                         html  
    shannon                                 html  
    simpson_index                           html  
    upsample_counts                         html  
    write_to_biom                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'SummarizedExperiment::colnames' by 'biomformat::colnames' when loading 'animalcules'
Warning: replacing previous import 'SummarizedExperiment::rownames' by 'biomformat::rownames' when loading 'animalcules'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'SummarizedExperiment::colnames' by 'biomformat::colnames' when loading 'animalcules'
Warning: replacing previous import 'SummarizedExperiment::rownames' by 'biomformat::rownames' when loading 'animalcules'
** testing if installed package keeps a record of temporary installation path
* DONE (animalcules)
Making 'packages.html' ... done