############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf altcdfenvs.buildbin-libdir && mkdir altcdfenvs.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.57.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'altcdfenvs' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object) in method for 'toHypergraph' with signature '"CdfEnvAffy"': no definition for class "CdfEnvAffy" ** help *** installing help indices converting help for package 'altcdfenvs' finding HTML links ... done AffyProbesMatch-class html CdfEnvAffy-class html appendCdfEnvAffy html buildCdfEnv.biostrings html cdfenv html cdfenvEx html copyCdfEnvAffy html countduplicated html geneNames html getxy.probeseq html index2xy html indexProbes.CdfEnvAffy html matchAffyProbes html plot.CdfEnvAffy html removeIndex html toHypergraph html unique.CdfEnvAffy html utils.FASTA html validAffyBatch html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'altcdfenvs' as altcdfenvs_2.57.0.zip * DONE (altcdfenvs)