| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:21:03 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the XCIR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XCIR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2125/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| XCIR 1.10.0 (landing page) Renan Sauteraud
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: XCIR |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data XCIR |
| StartedAt: 2022-10-18 18:23:58 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 18:25:18 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 79.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data XCIR
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* checking for file ‘XCIR/DESCRIPTION’ ... OK
* preparing ‘XCIR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘xcir_intro.Rmd’ using knitr
Ensembl site unresponsive, trying useast mirror
Fetching genes for hg38
Fetching genes for hg38
Warning in getGenicDP(annoX, highest_expr = TRUE) :
There are no 'sex' column in the dataset. If not all subjects
are female, remove them or add a 'sex' column and run again.
Quitting from lines 146-147 (xcir_intro.Rmd)
Error: processing vignette 'xcir_intro.Rmd' failed with diagnostics:
object 'pvalue' not found
--- failed re-building ‘xcir_intro.Rmd’
SUMMARY: processing the following file failed:
‘xcir_intro.Rmd’
Error: Vignette re-building failed.
Execution halted