############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL VplotR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'VplotR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'VplotR' ** help *** installing help indices converting help for package 'VplotR' finding HTML links ... done ABF1_sacCer3 html ATAC_ce11_Serizay2020 html CTCF_hg38 html MNase_sacCer3_Henikoff2011 html MNase_sacCer3_Henikoff2011_subset html REB1_sacCer3 html alignToTSS html bam_test html ce11_all_REs html ce11_proms html computeNucleosomeEnrichmentOverBackground html computeVmat html deconvolveBidirectionalPromoters html getCuts html getFragmentsDistribution html importPEBamFiles html normalizeVmat html nucleosomeEnrichment.GRanges html nucleosomeEnrichment html nucleosomeEnrichment.Vmat html plotFootprint html plotProfile html plotVmat.GRanges html plotVmat html plotVmat.Vmat html plotVmat.VmatList html plotVmat.default html plotVmat.list html sampleGRanges.GRanges html sampleGRanges html shiftATACGranges html shuffleVmat html theme_ggplot2 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'VplotR' ** testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'VplotR' ** testing if installed package keeps a record of temporary installation path * DONE (VplotR) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'MDTS' is missing or broken done