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### Running command:
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###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=VanillaICE.buildbin-libdir VanillaICE_1.57.2.tar.gz
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* installing *source* package 'VanillaICE' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rinit.c -o rinit.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c viterbi.c -o viterbi.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Creating a new generic function for 'distance' in package 'VanillaICE'
** help
*** installing help indices
  converting help for package 'VanillaICE'
    finding HTML links ... done
    ArrayViews-class                        html  
    CopyNumScanParams                       html  
    finding level-2 HTML links ... done

    EmissionParam-methods                   html  
    FilterParam-class                       html  
    HMM                                     html  
    HMMList-class                           html  
    HMMList                                 html  
    HmmGRanges-methods                      html  
    HmmParam                                html  
    HmmTrellisParam                         html  
    IO                                      html  
    IdiogramParam-class                     html  
    IdiogramParams-class                    html  
    LogLik-class                            html  
    LogLik                                  html  
    LowLevelSummaries                       html  
    NA_filter                               html  
    SnpArrayExperiment-class                html  
    SnpExperiment                           html  
    SnpGRanges                              html  
    TransitionParam                         html  
    VanillaICE                              html  
    Viterbi-methods                         html  
    acf2                                    html  
    baumWelchUpdate                         html  
    calculateEmission                       html  
    cnvFilter                               html  
    doUpdate                                html  
    dropDuplicatedMapLocs                   html  
    dropSexChrom                            html  
    emission                                html  
    emissionParam                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/help/emissionParam.html
    filters                                 html  
    getExampleSnpExperiment                 html  
    getHmmParams                            html  
    hmm2                                    html  
    hmmResults                              html  
    isHeterozygous                          html  
    matrixOrNULL-class                      html  
    numberFeatures                          html  
    parseSourceFile                         html  
    parsedPath                              html  
    plotting                                html  
    probability                             html  
    rescale                                 html  
    robust-statistics                       html  
    segs                                    html  
    snpArrayAssays                          html  
    snp_exp                                 html  
    sourcePaths                             html  
    start-oligoSnpSet-method                html  
    state-methods                           html  
    sweepMode                               html  
    threshold                               html  
    updateHmmParams                         html  
    viewports                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'VanillaICE' as VanillaICE_1.57.2.zip
* DONE (VanillaICE)