############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.44.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TurboNorm.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TurboNorm.buildbin-libdir TurboNorm_1.44.0.tar.gz' >>>>>>> * installing *source* package ‘TurboNorm’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Rinit.c -o Rinit.o Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] NULL ^~~~ { } /Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL' # define NULL ((void*)0) ^~~~~~~~~~ 1 warning generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c binners.c -o binners.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TurboNorm.so Rinit.o binners.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.15-bioc/meat/TurboNorm.buildbin-libdir/00LOCK-TurboNorm/00new/TurboNorm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TurboNorm) >>>>>>> >>>>>>> FIXING LINKS FOR TurboNorm.buildbin-libdir/TurboNorm/libs/TurboNorm.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs/TurboNorm.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs/TurboNorm.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs/TurboNorm.so"