Ge Tan
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/TFBSTools |
| git_branch: master |
| git_last_commit: 6a72252 |
| git_last_commit_date: 2021-10-26 12:10:38 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:51 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TFBSTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFBSTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1952/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFBSTools 1.33.0 (landing page) Ge Tan
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: TFBSTools |
| Version: 1.33.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TFBSTools |
| StartedAt: 2022-03-17 16:06:28 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:07:52 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 83.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TFBSTools
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'TFBSTools' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function 'score':
matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
~~~~~~~~~~~~^~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c R_init_TFBSTools.c -o R_init_TFBSTools.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-TFBSTools/00new/TFBSTools/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
** help
*** installing help indices
converting help for package 'TFBSTools'
finding HTML links ... done
IUPAC2Matrix html
MA0004.1 html
MotifSet-class html
PFMSimilarity-methods html
PWMSimilarity-methods html
SitePairSet-class html
SitePairSetList-class html
SiteSet-class html
SiteSetList-class html
TFBSTools-package html
TFFM-class html
XMatrix-class html
XMatrixList-class html
calConservation-methods html
deleteMatrixHavingID-methods html
dmmEM-methods html
getEmissionProb html
getMatrixByID-methods html
getMatrixSet-methods html
getPosProb html
makeFlatFileDir html
parseMEMEOutput html
permuteMatrix-methods html
rPWMDmm-methods html
readJASPARMatrix html
readXMLTFFM html
runMEME-methods html
sampleRanges html
searchAln-methods html
searchPairBSgenome-methods html
searchSeq-methods html
seqLogo html
shannon.entropy html
toGRangesList-methods html
toICM-methods html
finding level-2 HTML links ... done
toPWM-methods html
writeGFF3-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFBSTools)
Making 'packages.html' ... done