############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=TCGAutils.buildbin-libdir TCGAutils_1.15.6.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'TCGAutils' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TCGAutils' finding HTML links ... done ID-translation html TCGAbarcode html TCGAbiospec html TCGAprimaryTumors html finding level-2 HTML links ... done TCGAsampleSelect html TCGAutils-package html builds html clinicalNames html curatedTCGAData-helpers html diseaseCodes html findGRangesCols html generateMap html getFileName html hidden-helpers html imputeAssay html makeGRangesListFromCopyNumber html makeGRangesListFromExonFiles html makeSummarizedExperimentFromGISTIC html mergeColData html oncoPrintTCGA html sampleTypes html simplifyTCGA html trimColData html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'TCGAutils' as TCGAutils_1.15.6.zip * DONE (TCGAutils)