############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Sushi ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'Sushi' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Sushi' finding HTML links ... done SushiColors html Sushi_5C.bedpe html Sushi_ChIAPET_pol2.bedpe html Sushi_ChIPExo_CTCF.bedgraph html Sushi_ChIPSeq_CTCF.bedgraph html Sushi_ChIPSeq_pol2.bed html Sushi_ChIPSeq_pol2.bedgraph html Sushi_ChIPSeq_severalfactors.bed html Sushi_DNaseI.bedgraph html Sushi_GWAS.bed html Sushi_HiC.matrix html Sushi_RNASeq_K562.bedgraph html Sushi_genes.bed html Sushi_hg18_genome html Sushi_transcripts.bed html addlegend html chromOffsets html convertstrandinfo html labelgenome html labelplot html maptocolors html maptolwd html opaque html plotBed html plotBedgraph html plotBedpe html plotGenes html finding level-2 HTML links ... done plotHic html plotManhattan html sortChrom html zoombox html zoomsregion html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'Sushi' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package can be loaded from final location Warning: Package 'Sushi' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package keeps a record of temporary installation path * DONE (Sushi) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'TDARACNE' is missing or broken done