############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=Sushi.buildbin-libdir Sushi_1.33.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'Sushi' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Sushi' finding HTML links ... done SushiColors html Sushi_5C.bedpe html Sushi_ChIAPET_pol2.bedpe html Sushi_ChIPExo_CTCF.bedgraph html Sushi_ChIPSeq_CTCF.bedgraph html Sushi_ChIPSeq_pol2.bed html Sushi_ChIPSeq_pol2.bedgraph html Sushi_ChIPSeq_severalfactors.bed html Sushi_DNaseI.bedgraph html Sushi_GWAS.bed html Sushi_HiC.matrix html Sushi_RNASeq_K562.bedgraph html Sushi_genes.bed html Sushi_hg18_genome html Sushi_transcripts.bed html addlegend html chromOffsets html convertstrandinfo html labelgenome html labelplot html maptocolors html maptolwd html opaque html plotBed html plotBedgraph html plotBedpe html plotGenes html finding level-2 HTML links ... done plotHic html plotManhattan html sortChrom html zoombox html zoomsregion html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'Sushi' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package can be loaded from final location Warning: Package 'Sushi' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Sushi' as Sushi_1.33.1.zip * DONE (Sushi)