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###
### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SLGI
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SLGI' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning messages:
1: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16 
2: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16 
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
  converting help for package 'SLGI'
    finding HTML links ... done
    Atong                                   html  
    AtongFnDomain                           html  
    AtongPair                               html  
    Boeke                                   html  
    SDL                                     html  
    SGA                                     html  
    SGD.SL                                  html  
    TFmat                                   html  
    byComplex                               html  
    comemberIn                              html  
    compare                                 html  
    congruence                              html  
    createSquareMatrix                      html  
    dSLAM.GPL1444                           html  
    domainDist                              html  
    essglist                                html  
    getInteraction                          html  
    getSharedDomains                        html  
    getSharedInteraction                    html  
    getTestedPairs                          html  
    getUniquePairs                          html  
    gi2005                                  html  
    gi2007                                  html  
    gi2Interactome                          html  
    hyperG                                  html  
    iSummary                                html  
    modelSLGI                               html  
    normInteraction                         html  
    plot                                    html  
    seqMatcherAlign                         html  
    sharedBy                                html  
    sharedInt                               html  
    siResult-class                          html  
    test2Interact                           html  
    topInteraction                          html  
    twoWayTable                             html  
    withinComplex                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16
Warning: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
Warning: Package 'SLGI' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package can be loaded from final location
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16
Warning: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
Warning: Package 'SLGI' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package keeps a record of temporary installation path
* DONE (SLGI)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'RTN' is missing or broken
 done