############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SIM ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'SIM' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c withinWindow.c -o withinWindow.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-SIM/00new/SIM/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SIM' finding HTML links ... done RESOURCERER.annotation.to.ID html SIM-package html acgh.data html assemble.data html chrom.table html expr.data html getoverlappingregions html impute.nas.by.surrounding html integrated.analysis html link.metadata html samples html sim.plot.overlapping.indep.dep.features html sim.plot.pvals.on.genome html sim.plot.pvals.on.region html sim.plot.zoom.in html sim.plot.zscore.heatmap html sim.update.chrom.table html tabulate.pvals html tabulate.top.dep.features html tabulate.top.indep.features html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SIM) Making 'packages.html' ... done