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This page was generated on 2022-03-18 11:08:32 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for RpsiXML on riesling1


To the developers/maintainers of the RpsiXML package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RpsiXML.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1659/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.37.1  (landing page)
Jitao David Zhang
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/RpsiXML
git_branch: master
git_last_commit: 9cb6fba
git_last_commit_date: 2022-01-10 10:29:24 -0400 (Mon, 10 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: RpsiXML
Version: 2.37.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL RpsiXML
StartedAt: 2022-03-17 15:50:54 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:52:33 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 99.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL RpsiXML
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'RpsiXML' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RpsiXML'
    finding HTML links ... done
    BIOGRID.PSIMI25                         html  
    availableXrefs-methods                  html  
    availableXrefs                          html  
    bait                                    html  
    buildPCHypergraph                       html  
    complexName                             html  
    complexes                               html  
    eListHandler                            html  
    getAbstractByPMID                       html  
    graphSpeciesConverter                   html  
    interactionType                         html  
    interactions                            html  
    interactorInfo-methods                  html  
    interactorInfo                          html  
    interactors                             html  
    list2Matrix                             html  
    null2na                                 html  
    numInteractions-methods                 html  
    parsePsimi25Interaction                 html  
    psimi25Attribute-class                  html  
    psimi25Complex-class                    html  
    psimi25ComplexEntry-class               html  
    psimi25Experiment-class                 html  
    psimi25Graph-class                      html  
    psimi25Hypergraph-class                 html  
    psimi25Hypergraph2GraphNEL              html  
    psimi25Interaction-class                html  
    psimi25InteractionEntry-class           html  
    psimi25Interactor-class                 html  
    psimi25Source-class                     html  
    psimi25XML2Graph                        html  
    separateXMLDataByExpt                   html  
    sourceId-methods                        html  
    taxId-methods                           html  
    translateID-methods                     html  
    translateID                             html  
    uniprot-methods                         html  
    uniprot                                 html  
    validatePSIMI25                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package can be loaded from final location
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package keeps a record of temporary installation path
* DONE (RpsiXML)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MGFR' is missing or broken
 done