############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=RpsiXML.buildbin-libdir RpsiXML_2.37.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'RpsiXML' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RpsiXML' finding HTML links ... done BIOGRID.PSIMI25 html availableXrefs-methods html availableXrefs html bait html buildPCHypergraph html complexName html complexes html eListHandler html getAbstractByPMID html graphSpeciesConverter html interactionType html interactions html interactorInfo-methods html interactorInfo html interactors html list2Matrix html null2na html numInteractions-methods html parsePsimi25Interaction html psimi25Attribute-class html psimi25Complex-class html psimi25ComplexEntry-class html psimi25Experiment-class html psimi25Graph-class html psimi25Hypergraph-class html psimi25Hypergraph2GraphNEL html psimi25Interaction-class html psimi25InteractionEntry-class html psimi25Interactor-class html psimi25Source-class html psimi25XML2Graph html separateXMLDataByExpt html sourceId-methods html taxId-methods html translateID-methods html translateID html uniprot-methods html uniprot html validatePSIMI25 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package can be loaded from final location Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor version 3.16 ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'RpsiXML' as RpsiXML_2.37.1.zip * DONE (RpsiXML)