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This page was generated on 2022-06-24 12:06:38 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Repitools on palomino3


To the developers/maintainers of the Repitools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1622/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Repitools 1.42.0  (landing page)
Mark Robinson
Snapshot Date: 2022-06-23 13:55:15 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/Repitools
git_branch: RELEASE_3_15
git_last_commit: 9936214
git_last_commit_date: 2022-04-26 11:08:15 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    NA  

Summary

Package: Repitools
Version: 1.42.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Repitools
StartedAt: 2022-06-23 16:32:21 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 16:33:37 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 76.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Repitools
###
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* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Repitools' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c const.c -o const.o
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c hyp2f1.c -o hyp2f1.o
In file included from hyp2f1.c:81:
./mconf.h:100: warning: "DOMAIN" redefined
  100 | #define DOMAIN  1 /* argument domain error */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition
   29 | #define DOMAIN  _DOMAIN
      | 
In file included from hyp2f1.c:81:
./mconf.h:101: warning: "SING" redefined
  101 | #define SING  2 /* argument singularity */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition
   30 | #define SING  _SING
      | 
In file included from hyp2f1.c:81:
./mconf.h:102: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW 3 /* overflow range error */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition
   31 | #define OVERFLOW _OVERFLOW
      | 
In file included from hyp2f1.c:81:
./mconf.h:103: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW 4 /* underflow range error */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition
   32 | #define UNDERFLOW _UNDERFLOW
      | 
In file included from hyp2f1.c:81:
./mconf.h:104: warning: "TLOSS" redefined
  104 | #define TLOSS  5 /* total loss of precision */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition
   33 | #define TLOSS  _TLOSS
      | 
In file included from hyp2f1.c:81:
./mconf.h:105: warning: "PLOSS" redefined
  105 | #define PLOSS  6 /* partial loss of precision */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition
   34 | #define PLOSS  _PLOSS
      | 
gcc  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -D R_NO_REMAP -I.    -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c mtherr.c -o mtherr.o
In file included from mtherr.c:58:
./mconf.h:100: warning: "DOMAIN" redefined
  100 | #define DOMAIN  1 /* argument domain error */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/R.h:47,
                 from mtherr.c:56:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition
   29 | #define DOMAIN  _DOMAIN
      | 
In file included from mtherr.c:58:
./mconf.h:101: warning: "SING" redefined
  101 | #define SING  2 /* argument singularity */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/R.h:47,
                 from mtherr.c:56:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition
   30 | #define SING  _SING
      | 
In file included from mtherr.c:58:
./mconf.h:102: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW 3 /* overflow range error */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/R.h:47,
                 from mtherr.c:56:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition
   31 | #define OVERFLOW _OVERFLOW
      | 
In file included from mtherr.c:58:
./mconf.h:103: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW 4 /* underflow range error */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/R.h:47,
                 from mtherr.c:56:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition
   32 | #define UNDERFLOW _UNDERFLOW
      | 
In file included from mtherr.c:58:
./mconf.h:104: warning: "TLOSS" redefined
  104 | #define TLOSS  5 /* total loss of precision */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/R.h:47,
                 from mtherr.c:56:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition
   33 | #define TLOSS  _TLOSS
      | 
In file included from mtherr.c:58:
./mconf.h:105: warning: "PLOSS" redefined
  105 | #define PLOSS  6 /* partial loss of precision */
      | 
In file included from F:/biocbuild/bbs-3.15-bioc/R/include/R.h:47,
                 from mtherr.c:56:
c:\rtools42\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition
   34 | #define PLOSS  _PLOSS
      | 
gcc -shared -s -static-libgcc -o Repitools.dll tmp.def const.o hyp2f1.o mtherr.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Repitools/00new/Repitools/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Repitools)