############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL RVS ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'RVS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RVS' finding HTML links ... done ComputeKinshipPropCoef-methods html GeneDrop html RVS html RVgene html RVsharing-methods html SnpMatrixToCount html ancestorDistance html areMating html checkArgs html computePFU html computePhiVec html convertMatrix html createNetwork html denomProb html enrichmentPValue html enrichmentPValue_R_Backend html ex.ped.mat html exactSharingProb html extract_carriers html fam15157.vcf html fam28003.vcf html founderOccurence html get.psubset html inferNumAlleles html inferTheta html isDescendant html marginalProb html monteCarloSharingProb html multipleFamilyPValue html multipleFamilyPValue_R_Backend html multipleVariantPValue html multipleVariantPValue_R_Backend html numerProb html oldArgs html oneFounderSharingProb html oneFounderSharingProbSplitting html ped2trio html processPedigree-methods html relatedFoundersCorrection html runMonteCarlo html samplePedigrees html simulatePedigree html snpMat html twoFounderSharingProb html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RVS) Making 'packages.html' ... done