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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RLSeq.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RLSeq_1.2.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/RLSeq.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RLSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RLSeq’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RLSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
report              86.333  3.793  91.513
RLSeq               35.910  1.274  38.000
featureEnrich       25.793  0.585  26.608
predictCondition    21.187  0.549  22.317
plotEnrichment      19.143  0.404  19.854
geneAnnotation      15.601  0.597  16.929
RLRangesFromRLBase  12.272  1.337  14.358
corrHeatmap         12.378  0.585  13.111
plotRLRegionOverlap 12.287  0.462  19.605
rlRegionTest         6.226  0.471   6.915
corrAnalyze          5.800  0.250   6.944
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  see ?RLHub and browseVignettes('RLHub') for documentation
  [ FAIL 1 | WARN 116 | SKIP 0 | PASS 6 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plotEnrichment.R:15'): Test plotEnrichment ───────────────────
  warns\[1\] does not match "User-supplied sample test value is NA for .*".
  Actual value: "Use of \.data in tidyselect expressions was deprecated in tidyselect 1\.2\.0\.\\ni Please use `"db"` instead of `\.data\$db`"
  Backtrace:
      ▆
   1. └─testthat::expect_match(warns[1], regexp = "User-supplied sample test value is NA for .*") at test-plotEnrichment.R:15:4
   2.   └─testthat:::expect_match_(...)
  
  [ FAIL 1 | WARN 116 | SKIP 0 | PASS 6 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.15-bioc/meat/RLSeq.Rcheck/00check.log’
for details.