############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PrInCE ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'PrInCE' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: PrInCE Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo *** installing help indices converting help for package 'PrInCE' finding HTML links ... done PrInCE html finding level-2 HTML links ... done adjacency_matrix_from_data_frame html adjacency_matrix_from_list html aic html build_gaussians html calculate_autocorrelation html calculate_features html calculate_precision html check_gaussians html choose_gaussians html clean_profile html clean_profiles html co_apex html concatenate_features html detect_complexes html filter_profiles html fit_curve html fit_gaussians html gold_standard html impute_neighbors html is_unweighted html is_weighted html kristensen html kristensen_gaussians html make_feature_from_data_frame html make_feature_from_expression html make_initial_conditions html make_labels html match_matrix_dimensions html predict_ensemble html predict_interactions html replace_missing_data html scott html scott_gaussians html threshold_precision html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PrInCE) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'lisaClust' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'SimBindProfiles' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'sva' is missing or broken done