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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Pi
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Pi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi'
** help
*** installing help indices
  converting help for package 'Pi'
    finding HTML links ... done
    EG                                      html  
    GS                                      html  
    aOnto                                   html  
    cTarget                                 html  
    dTarget                                 html  
    eGSEA                                   html  
    eTarget                                 html  
    eTerm                                   html  
    iSubg                                   html  
    ls_eTerm                                html  
    pNode                                   html  
    pPerf                                   html  
    sGS                                     html  
    sTarget                                 html  
    xAggregate                              html  
    xCheckParallel                          html  
    xCircos                                 html  
    xColormap                               html  
    xCombineNet                             html  
    xContour                                html  
    xConverter                              html  
    xCorrelation                            html  
    xDAGanno                                html  
    xDefineEQTL                             html  
    xDefineHIC                              html  
    xDefineNet                              html  
    xDefineOntology                         html  
    xEnrichForest                           html  
    xEnrichViewer                           html  
    xEnricher                               html  
    xEnricherGenes                          html  
    xGGnetwork                              html  
    xGR                                     html  
    xGR2nGenes                              html  
    xGR2xGeneScores                         html  
    xGR2xGenes                              html  
    xGRscores                               html  
    xGRsort                                 html  
    xGSEAbarplot                            html  
    xGSEAconciser                           html  
    xGSEAdotplot                            html  
    xGSsimulator                            html  
    xGeneID2Symbol                          html  
    xHeatmap                                html  
    xLayout                                 html  
    xLiftOver                               html  
    xMEabf                                  html  
    xMLcaret                                html  
    xMLcompare                              html  
    xMLdensity                              html  
    xMLdotplot                              html  
    xMLfeatureplot                          html  
    xMLglmnet                               html  
    xMLparameters                           html  
    xMLrandomforest                         html  
    xMLrename                               html  
    xMLzoom                                 html  
    xPieplot                                html  
    xPier                                   html  
    xPierABF                                html  
    xPierABFheatmap                         html  
    xPierAnno                               html  
    xPierCor                                html  
    xPierCross                              html  
    xPierEvidence                           html  
    xPierGRs                                html  
    xPierGSEA                               html  
    xPierGenes                              html  
    xPierMRS                                html  
    xPierManhattan                          html  
    xPierMatrix                             html  
    xPierPathways                           html  
    xPierROCR                               html  
    xPierSNPs                               html  
    xPierSNPsAdv                            html  
    xPierSNPsAdvABF                         html  
    xPierSubnet                             html  
    xPierTrack                              html  
    xPierTrackAdv                           html  
    xPredictCompare                         html  
    xPredictROCR                            html  
    xRDataLoader                            html  
    xRWR                                    html  
    xSM2DF                                  html  
    xSNP2cGenes                             html  
    xSNP2eGenes                             html  
    xSNP2nGenes                             html  
    xSNPlocations                           html  
    xSNPscores                              html  
    xSparseMatrix                           html  
    xSubneterGenes                          html  
    xSymbol2GeneID                          html  
    xVisEvidence                            html  
    xVisEvidenceAdv                         html  
    xVisKernels                             html  
    xVisNet                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi'
** testing if installed package keeps a record of temporary installation path
* DONE (Pi)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'KnowSeq' is missing or broken
 done