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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PhenStat
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'PhenStat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PhenStat'
    finding HTML links ... done
    FisherExactTest                         html  
    JSONOutput                              html  
    LRDataset                               html  
    LargeDataObject-class                   html  
    PhenList-class                          html  
    PhenList                                html  
    PhenStatReport                          html  
    PhenTestResult-class                    html  
    PhenTestResult                          html  
    RRTest                                  html  
    TFDataset                               html  
    analysedDataset                         html  
    analysedDatasetPhenList                 html  
    analysedSubset                          html  
    analysisResults                         html  
    batchIn                                 html  
    boxplotResidualBatch                    html  
    boxplotSexGenotype                      html  
    boxplotSexGenotypeBatch                 html  
    boxplotSexGenotypeBatchAdjusted         html  
    boxplotSexGenotypeResult                html  
    boxplotSexGenotypeWeightBatchAdjusted   html  
    categoricalBarplot                      html  
    checkDataset                            html  
    classificationTag                       html  
    columnChecks                            html  
    columnLevels                            html  
    comparison                              html  
    dataset                                 html  
    determiningLambda                       html  
    dim                                     html  
    finalLRModel                            html  
    finalModel                              html  
    finalTFModel                            html  
    formulaDeterminingLambda                html  
    generateGraphs                          html  
    getColumn                               html  
    getColumnBatchAdjusted                  html  
    getColumnView                           html  
    getColumnWeightBatchAdjusted            html  
    getCountMatrices                        html  
    getDataset                              html  
    getGenotypeEffect                       html  
    getMatrix                               html  
    getPercentageMatrix                     html  
    getStat                                 html  
    getVariable                             html  
    getVariables                            html  
    hemiGenotype                            html  
    htest-class                             html  
    htestPhenStat-class                     html  
    matrixCount                             html  
    method                                  html  
    methodText                              html  
    modelFormula                            html  
    modelFormulaLR                          html  
    multipleBatches                         html  
    noSexes                                 html  
    parameters                              html  
    parserOutputSummary                     html  
    parserOutputSummaryLR                   html  
    parserOutputTFSummary                   html  
    performReverseTransformation            html  
    performTransformation                   html  
    plot.PhenList                           html  
    plot.PhenTestResult                     html  
    plotResidualPredicted                   html  
    printLROutput                           html  
    printTabStyle                           html  
    pvalue                                  html  
    qqplotGenotype                          html  
    qqplotRandomEffects                     html  
    qqplotRotatedResiduals                  html  
    recommendMethod                         html  
    refGenotype                             html  
    scatterplotGenotypeWeight               html  
    scatterplotGenotypeWeightResult         html  
    scatterplotSexGenotypeBatch             html  
    scatterplotSexGenotypeBatchResult       html  
    setBatch                                html  
    setGenotype                             html  
    setMissingValue                         html  
    setSex                                  html  
    setWeight                               html  
    startLRModel                            html  
    startModel                              html  
    startTFModel                            html  
    subsetText                              html  
    summaryOutput                           html  
    summaryPhenListResult                   html  
    testDataset                             html  
    testFinalLRModel                        html  
    testFinalModel                          html  
    testGenotype                            html  
    transformation                          html  
    transformationJSON                      html  
    transformationText                      html  
    vectorOutput                            html  
    vectorOutputMatrices                    html  
    weightIn                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PhenStat)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'supraHex' is missing or broken
 done