##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PharmacoGx_3.0.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R PharmacoGx.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PharmacoGx.buildbin-libdir PharmacoGx_3.0.2.tar.gz'
>>>>>>> 

* installing *source* package ‘PharmacoGx’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c metaPermC.c -o metaPermC.o
metaPermC.c:143:12: warning: unused variable 'num_larger' [-Wunused-variable]
  uint64_t num_larger = 0;
           ^
metaPermC.c:328:10: warning: unused variable 'temp' [-Wunused-variable]
  double temp;
         ^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c rCPP_bridge.cpp -o rCPP_bridge.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PharmacoGx.so RcppExports.o metaPermC.o rCPP_bridge.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/PharmacoGx.buildbin-libdir/00LOCK-PharmacoGx/00new/PharmacoGx/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PharmacoGx)


>>>>>>> 
>>>>>>> FIXING LINKS FOR PharmacoGx.buildbin-libdir/PharmacoGx/libs/PharmacoGx.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "PharmacoGx.buildbin-libdir/PharmacoGx/libs/PharmacoGx.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "PharmacoGx.buildbin-libdir/PharmacoGx/libs/PharmacoGx.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "PharmacoGx.buildbin-libdir/PharmacoGx/libs/PharmacoGx.so"