############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PERFect ### ############################################################################## ############################################################################## * checking for file ‘PERFect/DESCRIPTION’ ... OK * preparing ‘PERFect’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MethodIllustration.Rmd’ using rmarkdown Loading required package: sn Loading required package: stats4 Attaching package: 'sn' The following object is masked from 'package:stats': sd Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg, : Some parameter names have no starting/fixed value but have a default value: tau. Warning in rbind(deparse.level, ...) : number of columns of result, 20, is not a multiple of vector length 21 of arg 1 Warning in rbind(deparse.level, ...) : number of columns of result, 20, is not a multiple of vector length 21 of arg 1 Quitting from lines 587-594 (MethodIllustration.Rmd) Error: processing vignette 'MethodIllustration.Rmd' failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building ‘MethodIllustration.Rmd’ SUMMARY: processing the following file failed: ‘MethodIllustration.Rmd’ Error: Vignette re-building failed. Execution halted