##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PCAtools.buildbin-libdir && mkdir PCAtools.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=PCAtools.buildbin-libdir PCAtools_2.7.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'PCAtools' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/beachmat/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/dqrng/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/beachmat/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/dqrng/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c shuffle_matrix.cpp -o shuffle_matrix.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/iterator/iterator_concepts.hpp:10,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/concepts.hpp:20,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/size_type.hpp:20,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/range/size.hpp:21,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:29,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/random.hpp:70,
                 from shuffle_matrix.cpp:4:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o PCAtools.dll tmp.def RcppExports.o shuffle_matrix.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/PCAtools.buildbin-libdir/00LOCK-PCAtools/00new/PCAtools/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PCAtools'
    finding HTML links ... done
    biplot                                  html  
    finding level-2 HTML links ... done

    chooseGavishDonoho                      html  
    chooseMarchenkoPastur                   html  
    eigencorplot                            html  
    findElbowPoint                          html  
    getComponents                           html  
    getLoadings                             html  
    getVars                                 html  
    pairsplot                               html  
    parallelPCA                             html  
    pca                                     html  
    plotloadings                            html  
    screeplot                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PCAtools' as PCAtools_2.7.0.zip
* DONE (PCAtools)