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This page was generated on 2022-03-18 11:08:12 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for OmaDB on riesling1


To the developers/maintainers of the OmaDB package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmaDB.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1329/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmaDB 2.11.1  (landing page)
Klara Kaleb , Adrian Altenhoff
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/OmaDB
git_branch: master
git_last_commit: 77cbda3
git_last_commit_date: 2021-11-21 00:39:30 -0400 (Sun, 21 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'topGO' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: OmaDB
Version: 2.11.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OmaDB
StartedAt: 2022-03-17 15:47:18 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:48:21 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OmaDB
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'OmaDB' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OmaDB'
    finding HTML links ... done
    OmaDB-deprecated                        html  
    OmaDB-package                           html  
    annotateSequence                        html  
    cash-.omadb_obj                         html  
    formatTopGO                             html  
    getAnnotation-deprecated                html  
    getAttribute                            html  
    getData-deprecated                      html  
    getGenome                               html  
    getGenomeAlignment-deprecated           html  
    getGenomePairs                          html  
    getHOG                                  html  
    getLocus                                html  
    getOMAGroup                             html  
    getObjectAttributes                     html  
    getProtein                              html  
    getTaxonomy                             html  
    getTopGO                                html  
    getTree                                 html  
    getVersion                              html  
    getXref-deprecated                      html  
    group                                   html  
    hog                                     html  
    mapSequence                             html  
    orthologs                               html  
    pairs                                   html  
    protein                                 html  
    resolveURL                              html  
    searchProtein                           html  
    sequence_annotation                     html  
    sequence_map                            html  
    setAPI                                  html  
    taxonomy                                html  
    xref                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OmaDB)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'Modstrings' is missing or broken
 done