############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OGRE.buildbin-libdir && mkdir OGRE.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=OGRE.buildbin-libdir OGRE_0.99.8.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'OGRE' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE' Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE' Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE' ** help *** installing help indices converting help for package 'OGRE' finding HTML links ... done OGRE-package html OGREDataSet html OGREDataSetFromDir html SHREC html addDataSetFromHub html addGRanges html extendGRanges html extractPromoters html fOverlaps html gvizPlot html listPredefinedDataSets html loadAnnotations html makeExampleGRanges html makeExampleOGREDataSet html plotHist html readDataSetFromFolder html readQuery html readSubject html subsetGRanges html sumPlot html summarizeOverlap html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE' Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE' Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE' ** testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE' Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE' Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE' ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'OGRE' as OGRE_0.99.8.zip * DONE (OGRE)