############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_2.4.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R NuPoP.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NuPoP.buildbin-libdir NuPoP_2.4.0.tar.gz' >>>>>>> * installing *source* package ‘NuPoP’ ... ** using staged installation ** libs gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c vtbfb.f90 -o vtbfb.o gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c vtbfbNL4.f90 -o vtbfbNL4.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.15-bioc/meat/NuPoP.buildbin-libdir/00LOCK-NuPoP/00new/NuPoP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NuPoP) >>>>>>> >>>>>>> FIXING LINKS FOR NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"