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### Running command:
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###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:NetSAM.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings NetSAM_1.36.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/NetSAM.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘NetSAM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘NetSAM’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NetSAM’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘NetSAM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mapToSymbol
> ### Title: Map other ids to gene symbols
> ### Aliases: mapToSymbol
> ### Keywords: methods
> 
> ### ** Examples
> 
> 	
> 	###transform ids from a gene list to gene symbols###
> 	geneListDir <- system.file("extdata","exampleGeneList.txt",package="NetSAM")
> 	geneList <- read.table(geneListDir,header=FALSE,sep="\t",stringsAsFactors=FALSE)
> 	geneList <- as.vector(as.matrix(geneList))
> 	geneList_symbol <- mapToSymbol(inputData=geneList, organism="hsapiens", inputType="genelist",idType="affy_hg_u133_plus_2")
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
> 	
> 	###transform ids in the input network to gene symbols###
> 	inputNetwork <- system.file("extdata","exampleNetwork_nonsymbol.net",package="NetSAM")
> 	network_symbol <- mapToSymbol(inputData=inputNetwork,organism="hsapiens",inputType="network",idType="entrezgene_id",edgeType="unweighted")
Transforming the ids in the input network to gene symbols...
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
> 	
> 	###transform ids in the input matrix to gene symbols###
> 	inputMatDir <- system.file("extdata","exampleExpressionData_nonsymbol.cct",package="NetSAM")
> 	matrix_symbol <- mapToSymbol(inputData=inputMatDir,organism="hsapiens",inputType="matrix",idType="affy_hg_u133_plus_2",collapse_mode="maxSD")
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Ensembl site unresponsive, trying uswest mirror
> 	
> 	###transform ids in the sbt file to gene symbols###
> 	inputSBTDir <- system.file("extdata","exampleSBT.sbt",package="NetSAM")
> 	sbt_symbol <- mapToSymbol(inputData= inputSBTDir,organism="hsapiens",inputType="sbt",idType="affy_hg_u133_plus_2")
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Ensembl site unresponsive, trying asia mirror
Error in .GeneToSymbol(geneL, organism, idType, verbose) : 
  The function can not connect to Biomart. Please try again!
Calls: mapToSymbol -> .sbtToSymbol -> .GeneToSymbol
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.15-bioc/meat/NetSAM.Rcheck/00check.log’
for details.