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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL NanoTube
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'NanoTube' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NanoTube'
    finding HTML links ... done
    ExamplePathways                         html  
    ExampleResults                          html  
    NanoTube                                html  
    deVolcano                               html  
    fgseaPostprocessing                     html  
    fgseaPostprocessingXLSX                 html  
    fgseaToLEdge                            html  
    gm_mean                                 html  
    groupFGSEA                              html  
    groupedGSEAtoStackedReport              html  
    limmaToFGSEA                            html  
    makeDiffExprFile                        html  
    makeFGSEAmasterTable                    html  
    makeNanoStringSetFromEset               html  
    nanostringPCA                           html  
    negativeQC                              html  
    normalize_housekeeping                  html  
    normalize_pos_controls                  html  
    nsdiffToFGSEA                           html  
    positiveQC                              html  
    processNanostringData                   html  
    read_cpdb_sourceDBs                     html  
    read_cpdb_tab                           html  
    read_merge_rcc                          html  
    read_rcc                                html  
    read_sampleData                         html  
    remove_background                       html  
    runLimmaAnalysis                        html  
    unzip_dirs                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NanoTube)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'IRanges' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'PLPE' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'savR' is missing or broken
 done