############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=NanoMethViz.buildbin-libdir NanoMethViz_2.1.5.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'NanoMethViz' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include" -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include" -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include" -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c utils.cpp -o utils.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LD:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/NanoMethViz.buildbin-libdir/00LOCK-NanoMethViz/00new/NanoMethViz/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NanoMethViz' finding HTML links ... done NanoMethResult-class html NanoMethViz-package html bsseq_to_edger html bsseq_to_log_methy_ratio html cluster_regions html convert_methy_format html create_tabix_file html exons-set html exons html exons_to_genes html filter_methy html get_example_exons_mus_musculus html get_exons_homo_sapiens html get_exons_mus_musculus html load_example_nanomethresult html methy-set html methy html methy_col_names html methy_to_bsseq html methy_to_edger html plot_agg_regions html plot_gene html plot_gene_heatmap html plot_grange html plot_grange_heatmap html plot_mds html plot_pca html plot_region html plot_region_heatmap html query_exons html query_methy html raw_methy_to_tabix html region_methy_stats html samples-set html samples html sort_methy_file html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'NanoMethViz' as NanoMethViz_2.1.5.zip * DONE (NanoMethViz)