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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MOFA2
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MOFA2' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'rownames' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames' from package 'base' in package 'MOFA2'
Creating a generic function for 'nrow' from package 'base' in package 'MOFA2'
Creating a generic function for 'ncol' from package 'base' in package 'MOFA2'
Creating a generic function for 'rownames<-' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames<-' from package 'base' in package 'MOFA2'
** help
*** installing help indices
  converting help for package 'MOFA2'
    finding HTML links ... done
    MOFA                                    html  
    add_mofa_factors_to_seurat              html  
    calculate_contribution_scores           html  
    calculate_variance_explained            html  
    calculate_variance_explained_per_sample
                                            html  
    cluster_samples                         html  
    compare_elbo                            html  
    finding level-2 HTML links ... done

    compare_factors                         html  
    correlate_factors_with_covariates       html  
    covariates_names                        html  
    create_mofa                             html  
    create_mofa_from_MultiAssayExperiment   html  
    create_mofa_from_Seurat                 html  
    create_mofa_from_SingleCellExperiment   html  
    create_mofa_from_df                     html  
    create_mofa_from_matrix                 html  
    factors_names                           html  
    features_metadata                       html  
    features_names                          html  
    get_covariates                          html  
    get_data                                html  
    get_default_data_options                html  
    get_default_mefisto_options             html  
    get_default_model_options               html  
    get_default_stochastic_options          html  
    get_default_training_options            html  
    get_dimensions                          html  
    get_elbo                                html  
    get_expectations                        html  
    get_factors                             html  
    get_group_kernel                        html  
    get_imputed_data                        html  
    get_interpolated_factors                html  
    get_lengthscales                        html  
    get_scales                              html  
    get_variance_explained                  html  
    get_weights                             html  
    groups_names                            html  
    impute                                  html  
    interpolate_factors                     html  
    load_model                              html  
    make_example_data                       html  
    pipe                                    html  
    plot_alignment                          html  
    plot_ascii_data                         html  
    plot_data_heatmap                       html  
    plot_data_overview                      html  
    plot_data_scatter                       html  
    plot_data_vs_cov                        html  
    plot_dimred                             html  
    plot_enrichment                         html  
    plot_enrichment_detailed                html  
    plot_enrichment_heatmap                 html  
    plot_factor                             html  
    plot_factor_cor                         html  
    plot_factors                            html  
    plot_factors_vs_cov                     html  
    plot_group_kernel                       html  
    plot_interpolation_vs_covariate         html  
    plot_sharedness                         html  
    plot_smoothness                         html  
    plot_top_weights                        html  
    plot_variance_explained                 html  
    plot_variance_explained_by_covariates   html  
    plot_variance_explained_per_feature     html  
    plot_weights                            html  
    plot_weights_heatmap                    html  
    plot_weights_scatter                    html  
    predict                                 html  
    prepare_mofa                            html  
    run_enrichment                          html  
    run_mofa                                html  
    run_tsne                                html  
    run_umap                                html  
    samples_metadata                        html  
    samples_names                           html  
    select_model                            html  
    set_covariates                          html  
    subset_factors                          html  
    subset_features                         html  
    subset_groups                           html  
    subset_samples                          html  
    subset_views                            html  
    summarise_factors                       html  
    views_names                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MOFA2)
Making 'packages.html' ... done