############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MIMOSA.buildbin-libdir MIMOSA_1.33.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'MIMOSA' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -I"D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c BetaMix.cpp -o BetaMix.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -I"D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c MCMC.cpp -o MCMC.o MCMC.cpp: In function 'SEXPREC* fitMCMC(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': MCMC.cpp:73:9: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] if(file==NULL|fileP==NULL){ ^ MCMC.cpp:88:18: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] if(alphas.size()!=stim.ncol()){ ~~~~~~~~~~~~~^~~~~~~~~~~~~ MCMC.cpp:189:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0;i::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0;i::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int j=0;j::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int obs=0;obs::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int obs=0;obs&)': MCMC.cpp:631:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0;i&, std::vector&, std::vector&, std::vector&, std::vector&, int, int)': MCMC.cpp:681:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(i=0;i < lnull.size(); i++){ ~~^~~~~~~~~~~~~~ MCMC.cpp: In function 'double normconstIBeta(double, double, double, double)': MCMC.cpp:815:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0;i::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0;i<(s.size()-1);i++){ ~^~~~~~~~~~~~~ MCMC.cpp:893:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0;i