############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MAIT.buildbin-libdir && mkdir MAIT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MAIT.buildbin-libdir MAIT_1.29.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'MAIT' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'scores' in package 'MAIT' Creating a new generic function for 'loadings' in package 'MAIT' ** help *** installing help indices converting help for package 'MAIT' finding HTML links ... done Biotransformations html Database html FisherLSD html LSDResults html MAIT-class html finding level-2 HTML links ... done MAIT.FeatureData-class html MAIT.FeatureInfo-class html MAIT.Parameters-class html MAIT.PhenoData-class html MAIT.RawData-class html MAIT.Validation-class html MAIT_dataSet html MAITbuilder html PCAplot3d html PLSDA html SearchCand html Validation html annotateBiotransf html biotransformationsTable html classNum html classes html classifRatioClasses html featureID html featureInfo html featureSigID html getScoresTable html identifyMetabolites html inBetween html loadings html metaboliteTable html method html model html models html negAdducts html ovClassifRatio html ovClassifRatioTable html parameters html pcaLoadings html pcaModel html pcaScores html peakAggregation html peakAnnotation html plotBoxplot html plotHeatmap html plotPCA html plotPLS html plsLoadings html plsModel html plsScores html posAdducts html project html pvalues html pvaluesCorrection html rawData html removeOnePeakSpectra html resultsPath html retrieveSpectrum html sampleProcessing html scores html selectK html selectPLScomp html sigPeaksTable html spectralAnova html spectralFUN html spectralKruskal html spectralSigFeatures html spectralTStudent html spectralWelch html spectralWilcox html successRatio html writeExcelTable html writeParameterTable html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'MAIT' as MAIT_1.29.0.zip * DONE (MAIT)