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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MAGeCKFlute
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MAGeCKFlute' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
snapshotDate(): 2022-03-16
** help
*** installing help indices
  converting help for package 'MAGeCKFlute'
    finding HTML links ... done
    BarView                                 html  
    BatchRemove                             html  
    ConsistencyView                         html  
    CutoffCalling                           html  
    DensityDiffView                         html  
    DensityView                             html  
    EnrichAB                                html  
    EnrichAnalyzer                          html  
    EnrichSquare                            html  
    EnrichedFilter                          html  
    EnrichedGeneView                        html  
    EnrichedView                            html  
    FluteMLE                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/flutemle.html
    FluteRRA                                html  
    HeatmapView                             html  
    IdentBarView                            html  
    IncorporateDepmap                       html  
    MAView                                  html  
    MapRatesView                            html  
    NormalizeBeta                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/normalizebeta.html
    OmitCommonEssential                     html  
    RankView                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/rankview.html
    ReadBeta                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readbeta.html
    ReadGMT                                 html  
    ReadRRA                                 html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readrra.html
    ReadsgRRA                               html  
    ResembleDepmap                          html  
    ScatterView                             html  
    Selector                                html  
    SquareView                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/squareview.html
    TransGeneID                             html  
    ViolinView                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/violinview.html
    VolcanoView                             html  
    arrangePathview                         html  
    enrich.GSE                              html  
    enrich.HGT                              html  
    enrich.ORT                              html  
    getCols                                 html  
    getGeneAnn                              html  
    getOrg                                  html  
    getOrtAnn                               html  
    gsGetter                                html  
    hclustView                              html  
    loadDepmap                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/LoadDepmap.html
    noEnrichPlot                            html  
    normalize.loess                         html  
    reexports                               html  
    retrieve_gs                             html  
    sgRankView                              html  
    writeGMT                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2022-03-16
** testing if installed package can be loaded from final location
snapshotDate(): 2022-03-16
** testing if installed package keeps a record of temporary installation path
* DONE (MAGeCKFlute)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'PanomiR' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'recount3' is missing or broken
 done