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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MAGAR
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MAGAR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** help
*** installing help indices
  converting help for package 'MAGAR'
    finding HTML links ... done
    MethQTLInput-class                      html  
    finding level-2 HTML links ... done

    MethQTLResult-class                     html  
    QTL.OPTIONS                             html  
    computeCorrelationBlocks                html  
    doImport                                html  
    doMethQTL                               html  
    doMethQTLChromosome                     html  
    filterPval                              html  
    getAnno                                 html  
    getCorrelationBlocks                    html  
    getGeno                                 html  
    getMethData                             html  
    getOverlapUniverse                      html  
    getOverlappingQTL                       html  
    getPheno                                html  
    getResult                               html  
    getResultGWASMap                        html  
    getSamples                              html  
    getSpecificQTL                          html  
    imputeMeth                              html  
    joinMethQTLResult                       html  
    loadMethQTLInput                        html  
    loadMethQTLResult                       html  
    overlapInputs                           html  
    overlapQTLs                             html  
    qtlAnnotationEnrichment                 html  
    qtlBaseSubstitutionEnrichment           html  
    qtlDistanceScatterplot                  html  
    qtlGetOption                            html  
    qtlJSON2options                         html  
    qtlManhattanPlot                        html  
    qtlOptions2JSON                         html  
    qtlPlotBaseSubstitution                 html  
    qtlPlotClusterSize                      html  
    qtlPlotSNPCpGInteraction                html  
    qtlSetOption                            html  
    qtlTFBSMotifEnrichment                  html  
    qtlUpSetPlotCorBlocks                   html  
    qtlUpSetPlotTagCpGs                     html  
    qtlUpsetPlot                            html  
    qtlVennPlot                             html  
    saveMethQTLInput                        html  
    saveMethQTLResult                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path
* DONE (MAGAR)
Making 'packages.html' ... done