############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL LOLA ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'LOLA' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'LOLA' finding HTML links ... done LOLA html buildRestrictedUniverse html checkUniverseAppropriateness html cleanws html countOverlapsAnyRev html extractEnrichmentOverlaps html getRegionFile html getRegionSet html lapplyAlias html listRegionSets html listToGRangesList html loadRegionDB html mergeRegionDBs html nlist html plotTopLOLAEnrichments html readBed html readCollection html readCollectionAnnotation html readCollectionFiles html readRegionGRL html readRegionSetAnnotation html redefineUserSets html replaceFileExtension html runLOLA html sampleGRL html setLapplyAlias html setSharedDataDir html splitDataTable html splitFileIntoCollection html userSets html userUniverse html write.tsv html writeCombinedEnrichment html writeDataTableSplitByColumn html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LOLA) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'TnT' is missing or broken done