##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HiLDA.buildbin-libdir && mkdir HiLDA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=HiLDA.buildbin-libdir HiLDA_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'HiLDA' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c EMalgorithm.cpp -o EMalgorithm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c checkBoundary.cpp -o checkBoundary.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c convertFromToVector.cpp -o convertFromToVector.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o HiLDA.dll tmp.def EMalgorithm.o RcppExports.o checkBoundary.o convertFromToVector.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/HiLDA.buildbin-libdir/00LOCK-HiLDA/00new/HiLDA/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiLDA'
    finding HTML links ... done
    EstimatedParameters-class               html  
    MetaInformation-class                   html  
    MutationFeatureData-class               html  
    PMSboundary                             html  
    boundaryTurbo_F                         html  
    boundaryTurbo_Q                         html  
    calcPMSLikelihood                       html  
    convertFromTurbo_F                      html  
    convertFromTurbo_Q                      html  
    convertToTurbo_F                        html  
    convertToTurbo_Q                        html  
    getLogLikelihoodC                       html  
    getMutationFeatureVector                html  
    hildaBarplot                            html  
    hildaDiffPlot                           html  
    hildaGlobalResult                       html  
    hildaLocalResult                        html  
    hildaPlotSignature                      html  
    hildaReadMPFile                         html  
    hildaRhat                               html  
    hildaTest                               html  
    mySquareEM                              html  
    pmBarplot                               html  
    pmMultiBarplot                          html  
    pmPlotSignature                         html  
    pmgetSignature                          html  
    updateMstepFQC                          html  
    updatePMSParam                          html  
    updateTheta_NormalizedC                 html  
    visPMS                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'HiLDA' as HiLDA_1.9.0.zip
* DONE (HiLDA)