############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'HiCDCPlus' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c straw.cpp -o straw.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'HiCDCPlus' finding HTML links ... done HTClist2gi_list html HiCDCPlus html HiCDCPlus_chr html HiCDCPlus_parallel html add_1D_features html add_2D_features html add_hic_counts html add_hicpro_allvalidpairs_counts html add_hicpro_matrix_counts html construct_features html construct_features_chr html construct_features_parallel html expand_1D_features html extract_hic_eigenvectors html generate_binned_gi_list html generate_bintolen_gi_list html generate_df_gi_list html get_chr_sizes html get_chrs html get_enzyme_cutsites html gi_list2HTClist html gi_list_Dthreshold.detect html gi_list_binsize_detect html gi_list_read html gi_list_topdom html gi_list_validate html gi_list_write html hic2icenorm_gi_list html hicdc2hic html hicdcdiff html straw html straw_dump html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCDCPlus) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'treekoR' is missing or broken done