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This page was generated on 2022-08-08 13:20:24 -0400 (Mon, 08 Aug 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4362
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4180
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for HiCDCPlus on merida1


To the developers/maintainers of the HiCDCPlus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDCPlus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 893/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCDCPlus 1.4.2  (landing page)
Merve Sahin
Snapshot Date: 2022-08-07 13:55:12 -0400 (Sun, 07 Aug 2022)
git_url: https://git.bioconductor.org/packages/HiCDCPlus
git_branch: RELEASE_3_15
git_last_commit: 70d7860
git_last_commit_date: 2022-06-06 10:44:47 -0400 (Mon, 06 Jun 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HiCDCPlus
Version: 1.4.2
Command: rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HiCDCPlus_1.4.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R HiCDCPlus.buildbin-libdir
StartedAt: 2022-08-08 10:32:09 -0400 (Mon, 08 Aug 2022)
EndedAt: 2022-08-08 10:33:43 -0400 (Mon, 08 Aug 2022)
EllapsedTime: 94.3 seconds
RetCode: 0
Status:   OK  
PackageFile: HiCDCPlus_1.4.2.tgz
PackageFileSize: 1.417 MiB

Command output

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###
### Running command:
###
###   rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HiCDCPlus_1.4.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R HiCDCPlus.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.4.2.tar.gz'
>>>>>>> 

* installing *source* package ‘HiCDCPlus’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c straw.cpp -o straw.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HiCDCPlus.so RcppExports.o straw.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/HiCDCPlus.buildbin-libdir/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCDCPlus)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/HiCDCPlus.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/HiCDCPlus.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/HiCDCPlus.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/HiCDCPlus.so"